PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g002680.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 289aa    MW: 32700.3 Da    PI: 4.9366
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g002680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.13.3e-2198148256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ kl+ge
  Csa12g002680.1  98 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAMAYDLAAYKLRGE 148
                     59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.23E-3497155No hitNo description
SMARTSM003801.7E-3698161IPR001471AP2/ERF domain
PROSITE profilePS5103223.53898155IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2498155IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.8E-3298156IPR001471AP2/ERF domain
PfamPF008475.6E-1599148IPR001471AP2/ERF domain
PRINTSPR003672.1E-1199110IPR001471AP2/ERF domain
PRINTSPR003672.1E-11121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MAAIDMFNSN TDLSDPFKEE LMKALQPFTN NSVSSSSSPC PYSNTICGFN QTTPLGLNQL  60
TPYQIHQIQN QLNQRRNTIS PNLAPRPVPM KSMATQKLYR GVRQRHWGKW VAEIRLPKNR  120
TRLWLGTFDT AEEAAMAYDL AAYKLRGEFA RLNFPQFRHA DGYYGGDSFF NPLHSSVDGK  180
LQAICQSLRK TEDEDHHRIH LPCSETELFP PKTEYQESDE YGYLRSVENS FSDESQVESS  240
SSPESCVTTN TTFLDFSESG FDEIGSFGLE KFPSVEIDWD AISKLSES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2197155160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2194155163ATERF1
3gcc_A2e-2194155163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446537.10.0PREDICTED: ethylene-responsive transcription factor ERF060-like
SwissprotO656651e-174ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLR0H6F01e-179R0H6F0_9BRAS; Uncharacterized protein
STRINGAT4G39780.11e-171(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-149ERF family protein